3D structure

PDB id
8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZFI_089 not in the Motif Atlas
Geometric match to IL_4WF9_020
Geometric discrepancy: 0.0967
The information below is about IL_4WF9_020
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8ZFI|1|b|C|672
8ZFI|1|b|C|673
8ZFI|1|b|G|674
*
8ZFI|1|b|C|806
8ZFI|1|b|U|807
8ZFI|1|b|G|808

Current chains

Chain b
RNA (2903-MER)

Nearby chains

Chain e
50S ribosomal protein L4
Chain m
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1771 s