IL_8ZFI_107

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8ZFI|1|b|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_107 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.106

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8ZFI|1|b|U|1018
8ZFI|1|b|U|1019
8ZFI|1|b|A|1020
8ZFI|1|b|A|1021
8ZFI|1|b|G|1022
8ZFI|1|b|U|1023
8ZFI|1|b|G|1024
*
8ZFI|1|b|C|1140
8ZFI|1|b|U|1141
8ZFI|1|b|A|1142
8ZFI|1|b|A|1143
8ZFI|1|b|A|1144

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36

Chain k

50S ribosomal protein L13