IL_8ZFI_112
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8ZFI|1|b|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_112 not in the Motif Atlas
- Geometric match to IL_4WF9_044
- Geometric discrepancy: 0.1169
- The information below is about IL_4WF9_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
8ZFI|1|b|C|1196
8ZFI|1|b|G|1197
8ZFI|1|b|U|1198
*
8ZFI|1|b|A|1247
8ZFI|1|b|G|1248
8ZFI|1|b|U|1249
8ZFI|1|b|G|1250
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain m
- 50S ribosomal protein L15
- Chain r
- 50S ribosomal protein L20
Coloring options: