IL_8ZFI_117

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_117 not in the Motif Atlas

Geometric match to IL_4V9F_008

Geometric discrepancy: 0.147

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8ZFI|1|b|G|1310
8ZFI|1|b|G|1311
8ZFI|1|b|U|1312
8ZFI|1|b|U|1313
*
8ZFI|1|b|A|1603
8ZFI|1|b|C|1604

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34

Chain u

50S ribosomal protein L23