IL_8ZFI_118

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8ZFI|1|b|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_118 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2607

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8ZFI|1|b|C|1319
8ZFI|1|b|C|1320
8ZFI|1|b|A|1321
8ZFI|1|b|A|1322
8ZFI|1|b|C|1323
*
8ZFI|1|b|G|1331
8ZFI|1|b|G|1332
8ZFI|1|b|G|1333

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain t

50S ribosomal protein L22

Chain z

eRAP-NC