IL_8ZFI_120

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_120 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8ZFI|1|b|C|1357
8ZFI|1|b|G|1358
8ZFI|1|b|A|1359
8ZFI|1|b|G|1360
8ZFI|1|b|G|1361
*
8ZFI|1|b|C|1370
8ZFI|1|b|G|1371
8ZFI|1|b|U|1372
8ZFI|1|b|A|1373
8ZFI|1|b|G|1374

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34

Chain c

50S ribosomal protein L2