IL_8ZFI_121

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

8ZFI|1|b|U|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_121 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.3662

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8ZFI|1|b|U|1415
8ZFI|1|b|G|1416
*
8ZFI|1|b|C|1582
8ZFI|1|b|A|1583
8ZFI|1|b|U|1584
8ZFI|1|b|C|1585
8ZFI|1|b|A|1586
8ZFI|1|b|G|1587

Current chains

Chain b

RNA (2903-MER)

Nearby chains