IL_8ZFI_133

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_133 not in the Motif Atlas

Geometric match to IL_7A0S_060

Geometric discrepancy: 0.1751

The information below is about IL_7A0S_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

8ZFI|1|b|G|1663
8ZFI|1|b|A|1664
8ZFI|1|b|A|1665
*
8ZFI|1|b|U|1995
8ZFI|1|b|C|1996
8ZFI|1|b|C|1997

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L14

Chain q

50S ribosomal protein L19