IL_8ZFI_136

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8ZFI|1|b|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_136 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.3246

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZFI|1|b|U|1712
8ZFI|1|b|A|1713
8ZFI|1|b|U|1714
8ZFI|1|b|G|1715
8ZFI|1|b|U|1716
8ZFI|1|b|A|1717
8ZFI|1|b|G|1718
*
8ZFI|1|b|U|1742
8ZFI|1|b|G|1743
8ZFI|1|b|A|1744
8ZFI|1|b|A|1745
8ZFI|1|b|A|1746

Current chains

Chain b

RNA (2903-MER)

Nearby chains