IL_8ZFI_145

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_145 not in the Motif Atlas

Geometric match to IL_5J7L_317

Geometric discrepancy: 0.1869

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|U|1864
8ZFI|1|b|U|1865
8ZFI|1|b|A|1866
8ZFI|1|b|G|1867
*
8ZFI|1|b|C|1874
8ZFI|1|b|G|1875
8ZFI|1|b|A|1876
8ZFI|1|b|A|1877
8ZFI|1|b|G|1878

Current chains

Chain b

RNA (2903-MER)

Nearby chains