IL_8ZFI_154

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAGCCUUG*UAAUGUUUGA

Length

20 nucleotides

Bulged bases

8ZFI|1|b|U|2105, 8ZFI|1|b|A|2183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|U|2098
8ZFI|1|b|U|2099
8ZFI|1|b|G|2100
8ZFI|1|b|A|2101
8ZFI|1|b|G|2102
8ZFI|1|b|C|2103
8ZFI|1|b|C|2104
8ZFI|1|b|U|2105
8ZFI|1|b|U|2106
8ZFI|1|b|G|2107
*
8ZFI|1|b|U|2182
8ZFI|1|b|A|2183
8ZFI|1|b|A|2184
8ZFI|1|b|U|2185
8ZFI|1|b|G|2186
8ZFI|1|b|U|2187
8ZFI|1|b|U|2188
8ZFI|1|b|U|2189
8ZFI|1|b|G|2190
8ZFI|1|b|A|2191

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain h

50S ribosomal protein L9