IL_8ZFI_164

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_164 not in the Motif Atlas

Geometric match to IL_9DFE_093

Geometric discrepancy: 0.1427

The information below is about IL_9DFE_093

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8ZFI|1|b|U|2457
8ZFI|1|b|G|2458
8ZFI|1|b|A|2459
*
8ZFI|1|b|U|2493
8ZFI|1|b|G|2494

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain n

50S ribosomal protein L16

Chain y

50S ribosomal protein L27