IL_8ZFI_166

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_166 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.1182

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8ZFI|1|b|C|2466
8ZFI|1|b|C|2467
8ZFI|1|b|A|2468
8ZFI|1|b|A|2469
8ZFI|1|b|G|2470
*
8ZFI|1|b|C|2480
8ZFI|1|b|G|2481
8ZFI|1|b|A|2482
8ZFI|1|b|C|2483
8ZFI|1|b|G|2484

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36

Chain Z

Transfer RNA; tRNA

Chain n

50S ribosomal protein L16