IL_8ZFI_167

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_167 not in the Motif Atlas

Geometric match to IL_7A0S_088

Geometric discrepancy: 0.1317

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8ZFI|1|b|C|2507
8ZFI|1|b|G|2508
*
8ZFI|1|b|U|2580
8ZFI|1|b|G|2581
8ZFI|1|b|G|2582

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain d

50S ribosomal protein L3

Chain z

eRAP-NC