IL_8ZFI_177

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

8ZFI|1|b|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_177 not in the Motif Atlas

Geometric match to IL_4WF9_101

Geometric discrepancy: 0.1335

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8ZFI|1|b|U|2680
8ZFI|1|b|C|2681
8ZFI|1|b|A|2682
8ZFI|1|b|C|2683
8ZFI|1|b|U|2684
*
8ZFI|1|b|A|2725
8ZFI|1|b|A|2726
8ZFI|1|b|A|2727

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L14

Chain q

50S ribosomal protein L19