IL_8ZFI_181

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8ZFI|1|b|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_181 not in the Motif Atlas

Geometric match to IL_4WF9_022

Geometric discrepancy: 0.2735

The information below is about IL_4WF9_022

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8ZFI|1|b|C|2795
8ZFI|1|b|U|2796
*
8ZFI|1|b|A|2799
8ZFI|1|b|A|2800
8ZFI|1|b|G|2801

Current chains

Chain b

RNA (2903-MER)

Nearby chains