IL_8ZFI_184
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_184 not in the Motif Atlas
- Geometric match to IL_5J7L_353
- Geometric discrepancy: 0.1099
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8ZFI|1|b|G|2843
8ZFI|1|b|G|2844
8ZFI|1|b|U|2845
8ZFI|1|b|G|2846
*
8ZFI|1|b|C|2870
8ZFI|1|b|U|2871
8ZFI|1|b|A|2872
8ZFI|1|b|A|2873
8ZFI|1|b|C|2874
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain o
- 50S ribosomal protein L17
- Chain q
- 50S ribosomal protein L19
Coloring options: