IL_8ZFI_185

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_185 not in the Motif Atlas

Geometric match to IL_5J7L_354

Geometric discrepancy: 0.1436

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|U|2847
8ZFI|1|b|G|2848
8ZFI|1|b|U|2849
8ZFI|1|b|A|2850
8ZFI|1|b|A|2851
8ZFI|1|b|G|2852
*
8ZFI|1|b|U|2865
8ZFI|1|b|U|2866
8ZFI|1|b|G|2867
8ZFI|1|b|A|2868
8ZFI|1|b|G|2869

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain o

50S ribosomal protein L17

Chain q

50S ribosomal protein L19