IL_8ZHB_017
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_017 not in the Motif Atlas
- Homologous match to IL_8P9A_245
- Geometric discrepancy: 0.1785
- The information below is about IL_8P9A_245
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
8ZHB|1|LA|U|429
8ZHB|1|LA|U|430
8ZHB|1|LA|U|431
*
8ZHB|1|LA|A|627
8ZHB|1|LA|U|628
8ZHB|1|LA|A|629
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain Lg
- Large ribosomal subunit protein eL32
- Chain Lh
- Large ribosomal subunit protein eL33A
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