IL_8ZHB_019
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8ZHB|1|LA|A|518, 8ZHB|1|LA|U|519, 8ZHB|1|LA|G|567
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_019 not in the Motif Atlas
- Homologous match to IL_8P9A_247
- Geometric discrepancy: 0.3555
- The information below is about IL_8P9A_247
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52712.1
- Basepair signature
- cWW-L-R-tHW-tHW-tHW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8ZHB|1|LA|G|516
8ZHB|1|LA|G|517
8ZHB|1|LA|A|518
8ZHB|1|LA|U|519
8ZHB|1|LA|A|520
8ZHB|1|LA|A|521
8ZHB|1|LA|A|522
8ZHB|1|LA|U|523
8ZHB|1|LA|C|524
*
8ZHB|1|LA|G|566
8ZHB|1|LA|G|567
8ZHB|1|LA|A|568
8ZHB|1|LA|A|569
8ZHB|1|LA|U|570
8ZHB|1|LA|A|571
8ZHB|1|LA|C|572
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LO
- Large ribosomal subunit protein eL14A
- Chain LU
- Large ribosomal subunit protein eL20A
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