IL_8ZHB_025

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

8ZHB|1|LA|U|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_025 not in the Motif Atlas

Homologous match to IL_8CRE_027

Geometric discrepancy: 0.097

The information below is about IL_8CRE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZHB|1|LA|A|754
8ZHB|1|LA|U|755
*
8ZHB|1|LA|A|774
8ZHB|1|LA|U|775
8ZHB|1|LA|U|776

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LS

Large ribosomal subunit protein eL18A

Chain Ld

Large ribosomal subunit protein eL29