IL_8ZHB_032

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8ZHB|1|LA|U|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_032 not in the Motif Atlas

Homologous match to IL_8CRE_035

Geometric discrepancy: 0.0437

The information below is about IL_8CRE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8ZHB|1|LA|C|872
8ZHB|1|LA|U|873
8ZHB|1|LA|G|874
*
8ZHB|1|LA|C|885
8ZHB|1|LA|G|886

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Ll

Large ribosomal subunit protein eL37A