IL_8ZHB_038
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_038 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0648
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZHB|1|LA|G|990
8ZHB|1|LA|A|991
8ZHB|1|LA|G|992
8ZHB|1|LA|G|993
8ZHB|1|LA|U|994
8ZHB|1|LA|A|995
8ZHB|1|LA|A|996
*
8ZHB|1|LA|U|1051
8ZHB|1|LA|A|1052
8ZHB|1|LA|A|1053
8ZHB|1|LA|A|1054
8ZHB|1|LA|U|1055
8ZHB|1|LA|A|1056
8ZHB|1|LA|U|1057
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain LV
- Large ribosomal subunit protein eL21A
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