IL_8ZHB_042

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUCCGG*UUGAC

Length

12 nucleotides

Bulged bases

8ZHB|1|LA|U|1013, 8ZHB|1|LA|U|1014, 8ZHB|1|LA|C|1015, 8ZHB|1|LA|C|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|G|1012
8ZHB|1|LA|U|1013
8ZHB|1|LA|U|1014
8ZHB|1|LA|C|1015
8ZHB|1|LA|C|1016
8ZHB|1|LA|G|1017
8ZHB|1|LA|G|1018
*
8ZHB|1|LA|U|1032
8ZHB|1|LA|U|1033
8ZHB|1|LA|G|1034
8ZHB|1|LA|A|1035
8ZHB|1|LA|C|1036

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LG

Large ribosomal subunit protein uL18

Chain LL

Large ribosomal subunit protein uL16

Chain LM

Large ribosomal subunit protein uL5B

Chain Ta

Transfer RNA; tRNA