IL_8ZHB_049
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8ZHB|1|LA|U|1190, 8ZHB|1|LA|C|1191, 8ZHB|1|LA|C|1315, 8ZHB|1|LA|A|1317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_049 not in the Motif Atlas
- Homologous match to IL_8CRE_054
- Geometric discrepancy: 0.0642
- The information below is about IL_8CRE_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77278.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8ZHB|1|LA|C|1186
8ZHB|1|LA|U|1187
8ZHB|1|LA|C|1188
8ZHB|1|LA|A|1189
8ZHB|1|LA|U|1190
8ZHB|1|LA|C|1191
8ZHB|1|LA|A|1192
8ZHB|1|LA|G|1193
*
8ZHB|1|LA|C|1313
8ZHB|1|LA|U|1314
8ZHB|1|LA|C|1315
8ZHB|1|LA|A|1316
8ZHB|1|LA|A|1317
8ZHB|1|LA|G|1318
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain LO
- Large ribosomal subunit protein eL14A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain Lo
- Large ribosomal subunit protein eL40A
Coloring options: