IL_8ZHB_065

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_065 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.3273

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8ZHB|1|LA|U|1644
8ZHB|1|LA|G|1645
8ZHB|1|LA|A|1646
8ZHB|1|LA|A|1647
8ZHB|1|LA|U|1648
*
8ZHB|1|LA|A|1805
8ZHB|1|LA|G|1806
8ZHB|1|LA|G|1807
8ZHB|1|LA|A|1808
8ZHB|1|LA|A|1809

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lb

Large ribosomal subunit protein eL27A

Chain Li

Large ribosomal subunit protein eL34A