IL_8ZHB_071
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8ZHB|1|LA|U|1715, 8ZHB|1|LA|A|1728
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_071 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.1042
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZHB|1|LA|C|1710
8ZHB|1|LA|G|1711
8ZHB|1|LA|G|1712
8ZHB|1|LA|A|1713
8ZHB|1|LA|A|1714
8ZHB|1|LA|U|1715
8ZHB|1|LA|U|1716
*
8ZHB|1|LA|G|1726
8ZHB|1|LA|G|1727
8ZHB|1|LA|A|1728
8ZHB|1|LA|G|1729
8ZHB|1|LA|A|1730
8ZHB|1|LA|U|1731
8ZHB|1|LA|G|1732
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain Lb
- Large ribosomal subunit protein eL27A
- Chain Le
- Large ribosomal subunit protein eL30
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain SY
- Small ribosomal subunit protein uS15
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