IL_8ZHB_088

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8ZHB|1|LA|A|2280, 8ZHB|1|LA|C|2286, 8ZHB|1|LA|C|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_088 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0705

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8ZHB|1|LA|C|2276
8ZHB|1|LA|C|2277
8ZHB|1|LA|A|2278
8ZHB|1|LA|A|2279
8ZHB|1|LA|A|2280
8ZHB|1|LA|U|2281
8ZHB|1|LA|G|2282
8ZHB|1|LA|C|2283
8ZHB|1|LA|C|2284
8ZHB|1|LA|U|2285
8ZHB|1|LA|C|2286
8ZHB|1|LA|G|2287
*
8ZHB|1|LA|C|2303
8ZHB|1|LA|G|2304
8ZHB|1|LA|C|2305
8ZHB|1|LA|G|2306

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Ta

Transfer RNA; tRNA