IL_8ZHB_094

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

8ZHB|1|LA|A|2444, 8ZHB|1|LA|A|2446, 8ZHB|1|LA|G|2447, 8ZHB|1|LA|U|2498, 8ZHB|1|LA|U|2500, 8ZHB|1|LA|A|2501

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|C|2443
8ZHB|1|LA|A|2444
8ZHB|1|LA|U|2445
8ZHB|1|LA|A|2446
8ZHB|1|LA|G|2447
8ZHB|1|LA|A|2448
*
8ZHB|1|LA|U|2496
8ZHB|1|LA|U|2497
8ZHB|1|LA|U|2498
8ZHB|1|LA|A|2499
8ZHB|1|LA|U|2500
8ZHB|1|LA|A|2501
8ZHB|1|LA|G|2502

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lk

Large ribosomal subunit protein eL36A

Chain SQ

Small ribosomal subunit protein eS1A