IL_8ZHB_099

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_099 not in the Motif Atlas

Homologous match to IL_8CRE_110

Geometric discrepancy: 0.2253

The information below is about IL_8CRE_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79895.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8ZHB|1|LA|G|2769
8ZHB|1|LA|U|2770
8ZHB|1|LA|C|2771
8ZHB|1|LA|C|2772
*
8ZHB|1|LA|G|2786
8ZHB|1|LA|C|2787

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lq

Large ribosomal subunit protein eL42A