IL_8ZHB_172

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8ZHB|1|S2|G|539, 8ZHB|1|S2|G|540, 8ZHB|1|S2|A|541, 8ZHB|1|S2|A|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|S2|G|514
8ZHB|1|S2|A|515
8ZHB|1|S2|G|516
*
8ZHB|1|S2|C|536
8ZHB|1|S2|G|537
8ZHB|1|S2|A|538
8ZHB|1|S2|G|539
8ZHB|1|S2|G|540
8ZHB|1|S2|A|541
8ZHB|1|S2|A|542
8ZHB|1|S2|C|543

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A