IL_8ZHB_176

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8ZHB|1|S2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_176 not in the Motif Atlas

Geometric match to IL_8CRE_424

Geometric discrepancy: 0.1024

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8ZHB|1|S2|G|616
8ZHB|1|S2|U|617
8ZHB|1|S2|U|618
8ZHB|1|S2|A|619
8ZHB|1|S2|A|620
8ZHB|1|S2|A|621
8ZHB|1|S2|A|622
*
8ZHB|1|S2|U|1104
8ZHB|1|S2|C|1105

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain Sc

Small ribosomal subunit protein uS12A

Chain Se

Small ribosomal subunit protein eS26B