IL_8ZHB_180

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_180 not in the Motif Atlas

Geometric match to IL_1S03_003

Geometric discrepancy: 0.2133

The information below is about IL_1S03_003

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8ZHB|1|S2|A|746
8ZHB|1|S2|C|747
*
8ZHB|1|S2|G|802
8ZHB|1|S2|A|803
8ZHB|1|S2|A|804
8ZHB|1|S2|U|805

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SU

Small ribosomal subunit protein eS7A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sc

Small ribosomal subunit protein uS12A