IL_8ZHB_185

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_185 not in the Motif Atlas

Geometric match to IL_8CRE_433

Geometric discrepancy: 0.0655

The information below is about IL_8CRE_433

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ZHB|1|S2|G|871
8ZHB|1|S2|G|872
8ZHB|1|S2|U|873
8ZHB|1|S2|C|874
*
8ZHB|1|S2|G|953
8ZHB|1|S2|G|954
8ZHB|1|S2|A|955
8ZHB|1|S2|C|956

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A