IL_8ZHB_206

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ZHB|1|S2|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_206 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2026

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8ZHB|1|S2|G|1268
8ZHB|1|S2|U|1269
8ZHB|1|S2|G|1270
*
8ZHB|1|S2|C|1440
8ZHB|1|S2|C|1441

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SC

Small ribosomal subunit protein eS10A

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31