IL_8ZHB_221
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_221 not in the Motif Atlas
- Geometric match to IL_5J7L_363
- Geometric discrepancy: 0.0791
- The information below is about IL_5J7L_363
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8ZHB|1|S2|G|1642
8ZHB|1|S2|U|1643
8ZHB|1|S2|C|1644
*
8ZHB|1|S2|G|1757
8ZHB|1|S2|U|1758
8ZHB|1|S2|C|1759
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Ta
- Transfer RNA; tRNA
- Chain mR
- RNA (5'-R(P*GP*AP*UP*UP*GP*AP*CP*CP*CP*UP*U)-3')
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