IL_8ZHB_230

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

8ZHB|1|S2|G|1720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|S2|A|1678
8ZHB|1|S2|G|1679
8ZHB|1|S2|G|1680
8ZHB|1|S2|A|1681
8ZHB|1|S2|U|1682
*
8ZHB|1|S2|A|1719
8ZHB|1|S2|G|1720
8ZHB|1|S2|A|1721
8ZHB|1|S2|A|1722
8ZHB|1|S2|U|1723

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LY

Large ribosomal subunit protein eL24A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A