IL_8ZTU_019

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTU_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8ZTU|1|A|U|409
8ZTU|1|A|G|410
8ZTU|1|A|A|411
8ZTU|1|A|A|412
8ZTU|1|A|G|413
8ZTU|1|A|A|414
8ZTU|1|A|A|415
8ZTU|1|A|G|416
*
8ZTU|1|A|U|427
8ZTU|1|A|G|428
8ZTU|1|A|U|429
8ZTU|1|A|A|430
8ZTU|1|A|A|431
8ZTU|1|A|A|432
8ZTU|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4