IL_8ZTV_131

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8ZTV|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTV_131 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.099

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZTV|1|a|U|1712
8ZTV|1|a|A|1713
8ZTV|1|a|U|1714
8ZTV|1|a|G|1715
8ZTV|1|a|U|1716
8ZTV|1|a|A|1717
8ZTV|1|a|G|1718
*
8ZTV|1|a|U|1742
8ZTV|1|a|G|1743
8ZTV|1|a|A|1744
8ZTV|1|a|A|1745
8ZTV|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains