IL_8ZTV_157

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*(PSU)GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTV_157 not in the Motif Atlas

Homologous match to IL_4WF9_094

Geometric discrepancy: 0.1196

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

20

Unit IDs

8ZTV|1|a|C|2507
8ZTV|1|a|G|2508
*
8ZTV|1|a|PSU|2580
8ZTV|1|a|G|2581
8ZTV|1|a|G|2582

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Peptide chain release factor 2

Chain W

PepNL

Chain d

50S ribosomal protein L3