IL_9ASH_004

3D structure

PDB id

9ASH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the active Lactococcus lactis Csm bound to target in post-cleavage stage

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AGA*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ASH|1|R|A|35
9ASH|1|R|G|36
9ASH|1|R|A|37
*
9ASH|1|T|C|7
9ASH|1|T|U|8
9ASH|1|T|U|9

Current chains

Chain R

CRISPR RNA

Chain T

Target RNA

Nearby chains

Chain E

CRISPR system Cms protein Csm2

Chain I

CRISPR system Cms endoribonuclease Csm3

Chain J

CRISPR system Cms protein Csm5