3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_036 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0679
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9AX7|1|A|C|779
9AX7|1|A|A|780
9AX7|1|A|A|781
9AX7|1|A|A|782
9AX7|1|A|C|783
*
9AX7|1|A|G|799
9AX7|1|A|G|800
9AX7|1|A|U|801
9AX7|1|A|A|802
9AX7|1|A|G|803

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain U
30S ribosomal protein S21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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