IL_9AX7_073

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX7_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.39

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9AX7|1|a|C|274
9AX7|1|a|C|275
9AX7|1|a|U|276
9AX7|1|a|G|277
9AX7|1|a|A|278
9AX7|1|a|A|279
9AX7|1|a|U|280
9AX7|1|a|C|281
*
9AX7|1|a|G|359
9AX7|1|a|U|360
9AX7|1|a|G|361
9AX7|1|a|A|362
9AX7|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains