IL_9AX7_083

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX7_083 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.1078

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9AX7|1|a|U|703
9AX7|1|a|G|704
9AX7|1|a|A|705
9AX7|1|a|A|706
9AX7|1|a|G|707
*
9AX7|1|a|U|724
9AX7|1|a|G|725
9AX7|1|a|G|726
9AX7|1|a|A|727
9AX7|1|a|G|728

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2