IL_9AX8_009

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4052

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9AX8|1|A|C|274
9AX8|1|A|C|275
9AX8|1|A|U|276
9AX8|1|A|G|277
9AX8|1|A|A|278
9AX8|1|A|A|279
9AX8|1|A|U|280
9AX8|1|A|C|281
*
9AX8|1|A|G|359
9AX8|1|A|U|360
9AX8|1|A|G|361
9AX8|1|A|A|362
9AX8|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains