IL_9AX8_036

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9AX8|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1312

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9AX8|1|A|U|1018
9AX8|1|A|U|1019
9AX8|1|A|A|1020
9AX8|1|A|A|1021
9AX8|1|A|G|1022
9AX8|1|A|U|1023
9AX8|1|A|G|1024
*
9AX8|1|A|C|1140
9AX8|1|A|U|1141
9AX8|1|A|A|1142
9AX8|1|A|A|1143
9AX8|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Y

50S ribosomal protein L36