3D structure

PDB id
9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
9AX8|1|A|A|1127, 9AX8|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX8_037 not in the Motif Atlas
Homologous match to IL_5J7L_281
Geometric discrepancy: 0.0663
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

9AX8|1|A|G|1024
9AX8|1|A|G|1025
9AX8|1|A|G|1026
9AX8|1|A|A|1027
9AX8|1|A|A|1028
9AX8|1|A|A|1029
9AX8|1|A|C|1030
*
9AX8|1|A|G|1124
9AX8|1|A|G|1125
9AX8|1|A|A|1126
9AX8|1|A|A|1127
9AX8|1|A|G|1128
9AX8|1|A|A|1129
9AX8|1|A|U|1130
9AX8|1|A|G|1131
9AX8|1|A|U|1132
9AX8|1|A|A|1133
9AX8|1|A|A|1134
9AX8|1|A|C|1135
9AX8|1|A|G|1136
9AX8|1|A|G|1137
9AX8|1|A|G|1138
9AX8|1|A|G|1139
9AX8|1|A|C|1140

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16
Chain X
5S ribosomal RNA; 5S rRNA
Chain Y
50S ribosomal protein L36

Coloring options:


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