IL_9AX8_042

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAAGC*GCUC

Length

10 nucleotides

Bulged bases

9AX8|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_042 not in the Motif Atlas

Geometric match to IL_4LFB_068

Geometric discrepancy: 0.3995

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9AX8|1|A|G|1087
9AX8|1|A|A|1088
9AX8|1|A|A|1089
9AX8|1|A|A|1090
9AX8|1|A|G|1091
9AX8|1|A|C|1092
*
9AX8|1|A|G|1099
9AX8|1|A|C|1100
9AX8|1|A|U|1101
9AX8|1|A|C|1102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain Y

50S ribosomal protein L36