IL_9AX8_129

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

9AX8|1|a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.096

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9AX8|1|a|U|409
9AX8|1|a|G|410
9AX8|1|a|A|411
9AX8|1|a|A|412
9AX8|1|a|G|413
9AX8|1|a|A|414
9AX8|1|a|A|415
9AX8|1|a|G|416
*
9AX8|1|a|U|427
9AX8|1|a|G|428
9AX8|1|a|U|429
9AX8|1|a|A|430
9AX8|1|a|A|431
9AX8|1|a|A|432
9AX8|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4