IL_9AX8_172

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9AX8|1|a|A|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_172 not in the Motif Atlas

Geometric match to IL_2OZB_001

Geometric discrepancy: 0.2934

The information below is about IL_2OZB_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9AX8|1|a|U|1440
9AX8|1|a|A|1441
9AX8|1|a|G|1442
*
9AX8|1|a|C|1460
9AX8|1|a|G|1461

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L19

Chain t

30S ribosomal protein S20